PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G12420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23229 Da    PI: 7.4365
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G12420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.69.3e-251058250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     rien   rqvtf+kRr g+lKKA+ELSvLCda++ vi+fs+ gk+ye +
  OMERI04G12420.1 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVFSPLGKIYELA 58
                     8*********************************************965 PP

2K-box59.41.5e-2081172898
            K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      s+e++  +  qq++  L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le  +++iRs+K++++ ++ie l++ke  l+ +n  L++++
  OMERI04G12420.1  81 SNEQNIPQVIQQDVLLLRQEVDLLQNSLRYMYGErDISHMKLCELQSLESNLEVWVNNIRSTKMQIMSTEIEMLKNKEGILKAANDILQERI 172
                      4667778999***********************978****************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-27175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.086161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-34160IPR002100Transcription factor, MADS-box
CDDcd002656.48E-37273No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-2381172IPR002487Transcription factor, K-box
PROSITE profilePS5129712.91387179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVFSP LGKIYELATN  60
GNMQGLIERY KSNLPEAHAE SNEQNIPQVI QQDVLLLRQE VDLLQNSLRY MYGERDISHM  120
KLCELQSLES NLEVWVNNIR STKMQIMSTE IEMLKNKEGI LKAANDILQE RIIAQTSILD  180
VGGNMMIPQV PFQLTTESNY YF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-15192190Myocyte-specific enhancer factor 2B
1tqe_Q6e-15192190Myocyte-specific enhancer factor 2B
1tqe_R6e-15192190Myocyte-specific enhancer factor 2B
1tqe_S6e-15192190Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288322.11e-113MADS-box transcription factor 26-like
SwissprotA2YQK92e-76MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G82e-76MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A0E0DER11e-149A0A0E0DER1_9ORYZ; Uncharacterized protein
STRINGBGIOSGA015021-PA1e-138(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.14e-57AGAMOUS-like 12